easyLSEA - Lipid Set Enrichment Analysis with Dual KS and 'fgsea' Engines
Provides biology-aware lipid set enrichment analysis
(LSEA) for lipidomics data using dual engines: the
Kolmogorov-Smirnov test and the fast gene set enrichment
algorithm from the 'fgsea' package. Annotates lipids into
biological groups at three levels (lipid class, LIPID MAPS
category, functional category) and tests for coordinated
directional shifts between conditions. Includes fatty acid
chain analysis with trend plots weighted by lipid abundance
(Spearman rank correlation, configurable smoothing),
wide-format chain position output (sn-1, sn-2, sn-3, sn-4),
annotation confidence filtering, and export utilities for
reproducible reporting in CSV, 'Excel', and PDF formats.
Vignettes are available in English and Spanish. Methods are
based on Subramanian et al. (2005)
<doi:10.1073/pnas.0506580102> and Korotkevich et al. (2021)
<doi:10.1101/060012>.